PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA96G00100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 416aa    MW: 47455.6 Da    PI: 6.927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA96G00100genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.35.1e-1381105226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 + e C+f++rtG C+yG +C+F+H+
  AA96G00100  81 GVEDCSFYMRTGKCNYGLTCRFNHP 105
                 689*********************8 PP

2zf-CCCH27.17.3e-09144163726
                 SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   7 rffartGtCkyGdrCkFaHg 26 
                 ++++rtG CkyG++C+F+H+
  AA96G00100 144 QYYFRTGGCKYGENCNFNHS 163
                 59*****************7 PP

3zf-CCCH36.39.6e-12193216326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C +++++G Ck+G+ CkF+H+
  AA96G00100 193 EIECYYYMQNGSCKFGSDCKFNHP 216
                 568********************9 PP

4zf-CCCH331e-10363387226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C ++ r+G+Ck+G+ C+F H+
  AA96G00100 363 DQRVCTYYNRYGICKFGPACRFDHS 387
                 5789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.0E-679106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.56379107IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1081105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-582107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-485104IPR000571Zinc finger, CCCH-type
SMARTSM003561.5136164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.638141165IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6144163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5145163IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178190218IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9193216IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6194217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4196215IPR000571Zinc finger, CCCH-type
SMARTSM0035620307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.469307335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418361389IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4362388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5363390IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8363387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4365388IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSTFKGRTFD GFDQNPVSRS FSNDPSANFS VSELNEQFKN VGFDETVKLQ SNGGTDLRAV  60
ESNEEEEEEV KNENLYPVRD GVEDCSFYMR TGKCNYGLTC RFNHPIRSRI QIGRDNKVRE  120
KEEDVNNLNL MDCKCFSVCV LCLQYYFRTG GCKYGENCNF NHSNPKTYTT SLPKLTTSLP  180
KLNFLSLPIR PGEIECYYYM QNGSCKFGSD CKFNHPDPIS IGETNTPSFH GNGGSFGSYQ  240
GNSSSWSSPK HVDPNMFSQF RGVSSDWNGY QASVYPSSTY VVNNSSMETS FFSKYQHQMA  300
TEEFPERPDQ PEFSYYLKTG DCKFKFNCKY HHPKNRLPKQ PPFALNDKGL PLRPLFTCLN  360
SQDQRVCTYY NRYGICKFGP ACRFDHSNQQ TYSVISSKAM EPPQVSTNGN ESDGWN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875904.11e-174zinc finger (CCCH-type) family protein
SwissprotQ9STM41e-173C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7LRW71e-174D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRINGscaffold_501792.11e-173(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-156C3H family protein